Please find below the final program.
Wednesday, 18 September 2019
| 14:00–18:00 | Registration (Foyer I) |
| 15:00–17:30 | Workshops |
| Workshop 1 (HS 413) | |
| Practical aspects of HPLC separations in omics approaches | |
| Roland Reischl, University of Salzburg | |
| Workshop 2 (HS 403) | |
| Statistics Explained – From Principle Component Analysis to Multiple Testing to Nonparametrics | |
| Patrick Langthaler and Arne Bathke, University of Salzburg | |
| Workshop 3 (HS 414) | |
| Industrial aspects of biopharma characterization | |
| Urs Lohrig, Novartis | |
| 18:00–20:00 | Opening session (HS 403) |
| chaired by Ruth Birner-Grünberger | |
| 18:00 | Opening |
| 18:20 | Opening plenary lecture |
| Towards Functional Omics at Single Cell Resolution | |
| Ljiljana Paša-Tolić, Pacific Northwest National Laboratory, USA | |
| 19:00 | Short talk 1 |
| Addressing glutathione redox status in clinical samples using a novel assay based on two-step alkylation and mass spectrometry | |
| Tamara Tomin, Medical University of Graz | |
| 19:15 | Company presentation 1 |
| Human Breast Cancer Cell Line Phosphoproteome Revealed by an Automated and Highly Selective Enrichment Workflow | |
| Anthony Zerlin, Agilent Technologies Waldbronn | |
| 19:35 | Honorary Lecture: APMA publication award 2019 |
| 20:00–22:00 | Get together (Foyer I) |
Thursday, 19 September 2019
| 09:00–10:40 | Scientific session: Clinical proteomics (HS 403) |
| chaired by Hans Brandstetter | |
| 09:00 | Keynote lecture 2 |
| Protease Network Degradomics | |
| Ulrich auf dem Keller, TU Denmark | |
| 09:40 | Short talk 2 |
| Neutrophil extracellular traps formation correlates with the type of tumor spread in high grade serous ovarian cancer | |
| Besnik Muqaku, University of Vienna | |
| 09:55 | Short talk 3 |
| Discovery of tree pollen proteases with a potential role in development of allergy – an activity based approach | |
| Barbara Darnhofer, acib GmbH, Graz | |
| 10:10 | Short talk 4 |
| Combination of proteome profiling with mechanotransduction: expanding the knowledge about melanoma metastasis | |
| Giorgia Del Favero, University of Vienna | |
| 10:25 | Short talk 5 |
| Monoglyceride lipase activity influences growth and phosphoprotein profile of lung cancer cells | |
| Christoph Heininger, Medical University of Graz | |
| 10:40 | Coffee break |
| 11:10–12:35 | Scientific session: Metabolomics (HS 403) |
| chaired by Roland Reischl | |
| 11:10 | Keynote lecture 3 |
| Metabolomics – a valuable tool in cancer research | |
| Katja Dettmer-Wilde, University of Regensburg | |
| 11:50 | Short talk 6 |
| Black cohosh impairs steroid metabolism in human breast cancer cells: a targeted metabolomics approach | |
| Stefan Poschner, University of Vienna | |
| 12:05 | Short talk 7 |
| One carbon metabolomics in cancer | |
| Matthias Schittmayer-Schantl, Medical University of Graz | |
| 12:20 | Short talk 8 |
| Alterations of systematic metabolism upon viral infection: from metabolite profiling to isotope tracing | |
| Kristaps Klavins, CeMM, Vienna | |
| 12:35 | Lunch break |
| 13:15–14:45 | Poster session and coffee break (Foyer II) |
| 14:45–17:35 | Scientific session: Methods for protein separation and characterization (HS 403) |
| chaired by Christian G. Huber and Christof Regl | |
| 14:45 | Keynote lecture 4 |
| The versatility of 2D-LC in biopharmaceutical analysis | |
| Koen Sandra, Research Institute for Chromatography, Kortrijk | |
| 15:25 | Short talk 9 |
| Improved Sensitivity in Low-Input Proteomics using Micro-Pillar Array-based Chromatography | |
| Karl Mechtler, IMP, Vienna | |
| 15:40 | Short talk 10 |
| Peptide separation using strong anion exchange stationary phase on Liquid Handling Platform | |
| Lucija Dončević, Ruđer Bošković Institute, Zagreb | |
| 15:55 | Company presentation 2 |
| How Progenesis QI assists to gain biological understanding from large scale multi-omic datasets | |
| Martin Wells, Waters GmbH | |
| 16:15 | Coffee break |
| 16:45 | Short talk 11 |
| Displacement Chromatography Mode – A powerful tool for online 2D-LC-MS in proteomics | |
| Marcel Kwiatkowski, University of Innsbruck | |
| 17:00 | Short talk 12 |
| MALDI-TOF MS as a tool for tick cell lines characterization | |
| Dmitry Loginov, University of South Bohemia, České Budějovice | |
| 17:15 | Company presentation 3 |
| The Benefit of CCS Value Prediction for DB Searches in Metabolomics, Lipidomics and Proteomics | |
| Arnd Ingendoh, Bruker Daltonik GmbH | |
| 17:35–18:45 | APMA general assembly (HS 403) |
| 19:00–24:00 | Symposium party (Foyer I) |
| Music by Stringpower (https://stringpower.at) |
Friday, 20 September 2019
| 09:00–10:25 | Junior board session (HS 403) |
| chaired by Donatella Tesei and Florian Wiesenhofer | |
| 09:00 | Keynote lecture 5 |
| SubCellBarCode: An MS-based method and resource for proteome-wide mapping of protein localization and relocalization | |
| Lukas Orre, Karolinska Institutet, Solna | |
| 09:40 | Short talk 13 |
| Staphylococcus aureus surface profiling by Mass Spectrometry and IR spectroscopy to follow in-host evolution | |
| Katharina Mayer, University of Veterinary Medicine, Vienna | |
| 09:55 | Short talk 14 |
| Identifying key players responsible for local and systemic changes in colonic tissue and plasma samples of ulcerative colitis patients | |
| Lukas Janker, University of Vienna | |
| 10:10 | Flash presentations |
| 10:25 | Coffee break |
| 11:00–12:15 | Scientific session: Bioinformatics (HS 403) |
| chaired by André Müller | |
| 11:00 | Keynote lecture 6 |
| Contextualizing Proteomics and Metabolomics Data by Combining Literature Search and Machine Learning | |
| Magnus Palmblad, Leiden University Medical Center | |
| 11:40 | Short talk 15 |
| ReactomeGSA – A new service for multi-omics, multi-species comparative pathway analysis in REACTOME | |
| Johannes Griss, Medical University of Vienna | |
| 11:55 | Short talk 16 |
| MS Annika: An Integrated Search Tool for the Identification of Cross-Linked Peptides from Mass Spectrometry Data | |
| Georg J. Pirklbauer, FH OÖ Forschung & Entwicklung, Hagenberg | |
| 12:15 | Lunch break |
| 13:00–14:45 | Closing session |
| chaired by Klaus Kratochwill | |
| 13:00 | Short talk 17 |
| A Global Approach towards Determination of Fc-Glycosylation in Murine Immunoglobulin G (IgG) Subclasses by Means of HPLC-MS | |
| Constantin Blöchl, University of Salzburg | |
| 13:15 | Company presentation 4 |
| The New Pace of Discovery – Intelligence Driven Mass Spectrometry | |
| Samy Memmi, Thermo Fisher Scientific | |
| 13:35 | Closing plenary lecture |
| MS-Based Glycomics and Glycoproteomics: New Methods to Understand the Biological Attributes of Glycan and Glycopeptide Isomers | |
| Yehia Mechref, Texas Tech University | |
| 14:15 | Awards ceremony and closing |
| 14:45 | End of symposium |